Exports the cylinder data to be visualized with TreeQSM's plot_cylinder_model() function
Examples
# \donttest{
## TreeQSM Processing Chain
file <- system.file("extdata/QSM.mat", package = "rTwig")
qsm <- import_qsm(file)
#> Importing TreeQSM .mat
cylinder <- qsm$cylinder
cylinder <- update_cylinders(cylinder)
#> Updating Cylinder Ordering
#> Calculating Total Children
#> Building Cylinder Network
#> Verifying Topology
#> Calculating Growth Length
#> Calculating Reverse Branch Order
#> Calculating Branch Segments
#> Calculating Alternate Branch Numbers
#> Calculating Distance From Base
#> Calculating Average Distance To Twigs
filename <- tempfile(pattern = "TreeQSM_QSM.mat")
export_mat(cylinder, filename)
#> Exporting to .mat
## SimpleForest Processing Chain
file <- system.file("extdata/QSM.csv", package = "rTwig")
cylinder <- read.csv(file)
cylinder <- update_cylinders(cylinder)
#> Updating Branch Ordering
#> Calculating Total Children
#> Building Cylinder Network
#> Verifying Topology
#> Calculating Distance From Base
#> Calculating Average Distance To Twigs
filename <- tempfile(pattern = "SimpleForest_QSM.mat")
export_mat(cylinder, filename)
#> Exporting to .mat
# }