Exports the cylinder data to be visualized with TreeQSM's plot_cylinder_model().
Examples
## TreeQSM Processing Chain
file <- system.file("extdata/QSM.mat", package = "rTwig")
qsm <- import_qsm(file)
#> Importing TreeQSM
cylinder <- qsm$cylinder
cylinder <- update_cylinders(cylinder)
#> Updating Cylinder Ordering
#> Calculating Total Children
#> Building Cylinder Network
#> Caching Network
#> Verifying Topology
#> Calculating Growth Length
#> Calculating Reverse Branch Order
#> Calculating Branch Segments
#> Calculating Alternate Branch Numbers
#> Calculating Path Metrics
filename <- tempfile(pattern = "TreeQSM_QSM", fileext = ".mat")
export_mat(cylinder, filename)
#> Exporting to .mat
## SimpleForest Processing Chain
file <- system.file("extdata/QSM.csv", package = "rTwig")
cylinder <- read.csv(file)
cylinder <- update_cylinders(cylinder)
#> Finding Branches
#> Calculating Total Children
#> Building Cylinder Network
#> Caching Network
#> Verifying Topology
#> Calculating Path Metrics
filename <- tempfile(pattern = "SimpleForest_QSM", fileext = ".mat")
export_mat(cylinder, filename)
#> Exporting to .mat